Challenges and triumphs to genomics-based natural product discovery

TitleChallenges and triumphs to genomics-based natural product discovery
Publication TypeJournal Article
Year of Publication2014
AuthorsJensen PR, Chavarria K.L, Fenical W, Moore BS, Ziemert N.
JournalJournal of Industrial Microbiology & Biotechnology
Volume41
Pagination203-209
Date Published2014/02
Type of ArticleArticle
ISBN Number1367-5435
Accession NumberWOS:000330432700004
Keywordsactinomycete; biosynthesis; drug discovery; gene clusters; genome mining; genomics; marine; Natural product biosynthesis; polyketide; Salinispora; salinispora-pacifica; salinosporamide; sequence; sp nov.
Abstract

Genome sequencing is rapidly changing the field of natural products research by providing opportunities to assess the biosynthetic potential of strains prior to chemical analysis or biological testing. Ready access to sequence data is driving the development of new bioinformatic tools and methods to identify the products of silent or cryptic pathways. While genome mining has fast become a useful approach to natural product discovery, it has also become clear that identifying pathways of interest is much easier than finding the associated products. This has led to bottlenecks in the discovery process that must be overcome for the potential of genomics-based natural product discovery to be fully realized. In this perspective, we address some of these challenges in the context of our work with the marine actinomycete genus Salinispora, which is proving to be a useful model with which to apply genome mining as an approach to natural product discovery.

DOI10.1007/s10295-013-1353-8
Short TitleJ. Ind. Microbiol. Biotechnol.
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