Competitive strategies differentiate closely related species of marine actinobacteria

TitleCompetitive strategies differentiate closely related species of marine actinobacteria
Publication TypeJournal Article
Year of Publication2016
AuthorsPatin NV, Duncan K.R, Dorrestein PC, Jensen PR
JournalIsme Journal
Volume10
Pagination478-490
Date Published2016/02
Type of ArticleArticle
ISBN Number1751-7362
Accession NumberWOS:000368561100017
Keywordsactinomycete genus salinispora; antagonistic interactions; bacteria; bacterial diversity; community structure; deep-sea; evolution; microbial-populations; ocean sediments; pelagic; sp nov.
Abstract

Although competition, niche partitioning, and spatial isolation have been used to describe the ecology and evolution of macro-organisms, it is less clear to what extent these principles account for the extraordinary levels of bacterial diversity observed in nature. Ecological interactions among bacteria are particularly challenging to address due to methodological limitations and uncertainties over how to recognize fundamental units of diversity and link them to the functional traits and evolutionary processes that led to their divergence. Here we show that two closely related marine actinomycete species can be differentiated based on competitive strategies. Using a direct challenge assay to investigate inhibitory interactions with members of the bacterial community, we observed a temporal difference in the onset of inhibition. The majority of inhibitory activity exhibited by Salinispora arenicola occurred early in its growth cycle and was linked to antibiotic production. In contrast, most inhibition by Salinispora tropica occurred later in the growth cycle and was more commonly linked to nutrient depletion or other sources. Comparative genomics support these differences, with S. arenicola containing nearly twice the number of secondary metabolite biosynthetic gene clusters as S. tropica, indicating a greater potential for secondary metabolite production. In contrast, S. tropica is enriched in gene clusters associated with the acquisition of growth-limiting nutrients such as iron. Coupled with differences in growth rates, the results reveal that S. arenicola uses interference competition at the expense of growth, whereas S. tropica preferentially employs a strategy of exploitation competition. The results support the ecological divergence of two co-occurring and closely related species of marine bacteria by providing evidence they have evolved fundamentally different strategies to compete in marine sediments.

DOI10.1038/ismej.2015.128
Student Publication: 
No
Research Topics: 
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