Molecular networking as a dereplication strategy

TitleMolecular networking as a dereplication strategy
Publication TypeJournal Article
Year of Publication2013
AuthorsYang J.Y, Sanchez LM, Rath C.M, Liu X.T, Boudreau P.D, Bruns N., Glukhov E., Wodtke A., de Felicio R., Fenner A., Wong W.R, Linington RG, Zhang L.X, Debonsi H.M, Gerwick WH, Dorrestein PC
JournalJournal of Natural Products
Volume76
Pagination1686-1699
Date Published2013/09
Type of ArticleArticle
ISBN Number0163-3864
Accession NumberWOS:000330331200023
Keywordsabyssomicin-c; collection; cyanobacterium lyngbya-majuscula; discovery; dissociation; identification; ionization mass-spectrometry; marine; natural-product; spectral networks; verrucosispora strain
Abstract

A major goal in natural product discovery programs is to rapidly dereplicate known entities from complex biological extracts. We demonstrate here that molecular networking, an approach that organizes MS/MS data based on chemical similarity, is a powerful complement to traditional dereplication strategies. Successful dereplication with molecular networks requires MS/MS spectra of the natural product mixture along with MS/MS spectra of known standards, synthetic compounds, or well-characterized organisms, preferably organized into robust databases. This approach can accommodate different ionization platforms, enabling cross correlations of MS/MS data from ambient ionization, direct infusion, and LC-based methods. Molecular networking not only dereplicates known molecules from complex mixtures, it also captures related analogues, a challenge for many other dereplication strategies. To illustrate its utility as a dereplication tool, we apply mass spectrometry-based molecular networking to a diverse array of marine and terrestrial microbial samples, illustrating the dereplication of 58 molecules including analogues.

DOI10.1021/np400413s
Short TitleJ. Nat. Prod.
Student Publication: 
Yes
Student: 
sharknado