Publications

A.E Allen on Google Scholar

A.E. Allen on Mendeley (PDFs for all publications)

A.E Allen on Scripps Scholar

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

  • Worden, A. Z. and Allen, A. E. 2010. The voyage of the microbial eukaryote. Current Opinion in Microbiology. 13:652-660. 10.1016/J.Mib.2010.08.001
  • Yooseph, S. and Nealson, K. H. and Rusch, D. B. and McCrow, J. P. and Dupont, C. L. and Kim, M. and Johnson, J. and Montgomery, R. and Ferriera, S. and Beeson, K. and Williamson, S. J. and Tovchigrechko, A. and Allen, A. E. and Zeigler, L. A. and Sutton, G. and Eisenstadt, E. and Rogers, Y. H. and Friedman, R. and Frazier, M. and Venter, J. C. 2010. Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature. 468:60-+. 10.1038/Nature09530
  • Cock, J. M. and Sterck, L. and Rouze, P. and Scornet, D. and Allen, A. E. and Amoutzias, G. and Anthouard, V. and Artiguenave, F. and Aury, J. M. and Badger, J. H. and Beszteri, B. and Billiau, K. and Bonnet, E. and Bothwell, J. H. and Bowler, C. and Boyen, C. and Brownlee, C. and Carrano, C. J. and Charrier, B. and Cho, G. Y. and Coelho, S. M. and Collen, J. and Corre, E. and Da Silva, C. and Delage, L. and Delaroque, N. and Dittami, S. M. and Doulbeau, S. and Elias, M. and Farnham, G. and Gachon, C. M. M. and Gschloessl, B. and Heesch, S. and Jabbari, K. and Jubin, C. and Kawai, H. and Kimura, K. and Kloareg, B. and Kupper, F. C. and Lang, D. and Le Bail, A. and Leblanc, C. and Lerouge, P. and Lohr, M. and Lopez, P. J. and Martens, C. and Maumus, F. and Michel, G. and Miranda-Saavedra, D. and Morales, J. and Moreau, H. and Motomura, T. and Nagasato, C. and Napoli, C. A. and Nelson, D. R. and Nyvall-Collen, P. and Peters, A. F. and Pommier, C. and Potin, P. and Poulain, J. and Quesneville, H. and Read, B. and Rensing, S. A. and Ritter, A. and Rousvoal, S. and Samanta, M. and Samson, G. and Schroeder, D. C. and Segurens, B. and Strittmatter, M. and Tonon, T. and Tregear, J. W. and Valentin, K. and von Dassow, P. and Yamagishi, T. and Van de Peer, Y. and Wincker, P. 2010. The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature. 465:617-621. 10.1038/Nature09016
  • Cuvelier, M. L. and Allen, A. E. and Monier, A. and McCrow, J. P. and Messie, M. and Tringe, S. G. and Woyke, T. and Welsh, R. M. and Ishoey, T. and Lee, J. H. and Binder, B. J. and Dupont, C. L. and Latasa, M. and Guigand, C. and Buck, K. R. and Hilton, J. and Thiagarajan, M. and Caler, E. and Read, B. and Lasken, R. S. and Chavez, F. P. and Worden, A. Z. 2010. Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proceedings of the National Academy of Sciences of the United States of America. 107:14679-14684. 10.1073/Pnas.1001665107
  • Maheswari, U. and Jabbari, K. and Petit, J. L. and Porcel, B. M. and Allen, A. E. and Cadoret, J. P. and De Martino, A. and Heijde, M. and Kaas, R. and LaRoche, J. and Lopez, P. J. and Martin-Jezequel, V. and Meichenin, A. and Mock, T. and Parker, M. S. and Vardi, A. and Armbrust, E. V. and Weissenbach, J. and Katinka, M. and Bowler, C. 2010. Digital expression profiling of novel diatom transcripts provides insight into their biological functions. Genome Biology. 11. 10.1186/Gb-2010-11-8-R85
  • Bowler, C. and Vardi, A. and Allen, A. E. 2010. Oceanographic and Biogeochemical Insights from Diatom Genomes. Annual Review of Marine Science. 2:333-365. 10.1146/Annurev-Marine-120308-081051

2009

2008

  • Bowler, C. and Allen, A. E. and Badger, J. H. and Grimwood, J. and Jabbari, K. and Kuo, A. and Maheswari, U. and Martens, C. and Maumus, F. and Otillar, R. P. and Rayko, E. and Salamov, A. and Vandepoele, K. and Beszteri, B. and Gruber, A. and Heijde, M. and Katinka, M. and Mock, T. and Valentin, K. and Verret, F. and Berges, J. A. and Brownlee, C. and Cadoret, J. P. and Chiovitti, A. and Choi, C. J. and Coesel, S. and De Martino, A. and Detter, J. C. and Durkin, C. and Falciatore, A. and Fournet, J. and Haruta, M. and Huysman, M. J. J. and Jenkins, B. D. and Jiroutova, K. and Jorgensen, R. E. and Joubert, Y. and Kaplan, A. and Kroger, N. and Kroth, P. G. and LaRoche, J. and Lindquist, E. and Lommer, M. and Martin-Jezequel, V. and Lopez, P. J. and Lucas, S. and Mangogna, M. and McGinnis, K. and Medlin, L. K. and Montsant, A. and Oudot-Le Secq, M. P. and Napoli, C. and Obornik, M. and Parker, M. S. and Petit, J. L. and Porcel, B. M. and Poulsen, N. and Robison, M. and Rychlewski, L. and Rynearson, T. A. and Schmutz, J. and Shapiro, H. and Siaut, M. and Stanley, M. and Sussman, M. R. and Taylor, A. R. and Vardi, A. and von Dassow, P. and Vyverman, W. and Willis, A. and Wyrwicz, L. S. and Rokhsar, D. S. and Weissenbach, J. and Armbrust, E. V. and Green, B. R. and Van de Peer, Y. and Grigoriev, I. V. 2008. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239-244. 10.1038/Nature07410
  • Allen, A. E. and LaRoche, J. and Maheswari, U. and Lommer, M. and Schauer, N. and Lopez, P. J. and Finazzi, G. and Fernie, A. R. and Bowler, C. 2008. Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proceedings of the National Academy of Sciences of the United States of America. 105:10438-10443. 10.1073/Pnas.0711370105

2007

2006

2005

2004

  • Armbrust, E. V. and Berges, J. A. and Bowler, C. and Green, B. R. and Martinez, D. and Putnam, N. H. and Zhou, S. G. and Allen, A. E. and Apt, K. E. and Bechner, M. and Brzezinski, M. A. and Chaal, B. K. and Chiovitti, A. and Davis, A. K. and Demarest, M. S. and Detter, J. C. and Glavina, T. and Goodstein, D. and Hadi, M. Z. and Hellsten, U. and Hildebrand, M. and Jenkins, B. D. and Jurka, J. and Kapitonov, V. V. and Kroger, N. and Lau, W. W. Y. and Lane, T. W. and Larimer, F. W. and Lippmeier, J. C. and Lucas, S. and Medina, M. and Montsant, A. and Obornik, M. and Parker, M. S. and Palenik, B. and Pazour, G. J. and Richardson, P. M. and Rynearson, T. A. and Saito, M. A. and Schwartz, D. C. and Thamatrakoln, K. and Valentin, K. and Vardi, A. and Wilkerson, F. P. and Rokhsar, D. S. 2004. The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science. 306:79-86. 10.1126/science.1101156

2002

2001