Barott, K, J Caselle, E Dinsdale, A Friedlander, J Maragos, D Obura, F Rohwer, S Sandin, JE Smith, B Zgliczynski (in review) Natural history of the lagoon at Caroline/Millennium Atoll, Republic of Kiribati.
Wegley Kelly, L, KL Barott, E Dinsdale, B Nosrat, D Obura, S Sandin, JE Smith, D Willner, F Rohwer (in review) Black reefs and iron enrichment
Dinsdale EA and F Rohwer (2010; accepted) Fish or germs? Microbial dynamics associated with changing trophic structures on coral reefs. Book chapter.
Barott, K, JE Smith, E Dinsdale, M Hatay, SA Sandin, F Rohwer (2009) Hyperspectral and physiological analyses of coral-algal interactions. PLoS One. 4(11). 1-9.
Thurber, RV, D Willner-Hall, B Rodriguez-Mueller, C Desnues, RA Edwards, F Angly, EA Dinsdale, L Kelly, F Rohwer (2009) Metagenomic analysis of stressed coral holobionts.Environmental Microbiology. 11(5). 1-16.
Thurber, RLV, Barott, KL, Willner-Hall, D, Liu, H, Rodriguez-Mueller, B, Desnues, C, Edwards, RA, Haynes, M, Angly, FE, Wegley, L, Rohwer, F (2008) Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proceedings of the National Academy of Sciences, USA. 105 (47). 18413–18418.
Marhaver KL, RA Edwards, F Rohwer (2008) Viral communities associated with healthy and bleaching corals. Environmental Microbiology. 10 (9). 2277-2286.
Dinsdale, EA, O Pantos, S Smriga, RA Edwards, F Angly, L Wegley, M Hatay, D Hall, E Brown, M Haynes, L Krause, E Sala, SA Sandin, RV Thurber, BL Willis, F Azam, N Knowlton, F Rohwer (2008) Microbial ecology of four coral atolls in the Northern Line Islands. PLoS One. 3(2) e1584. 1-17.
Sandin, SA, JE Smith, EE DeMartini, EA Dinsdale, SD Donner, AM Friedlander, T Konotchick, M Malay, JE Maragos, D Obura, O Pantos, G Paulay, M Richie, F Rohwer, RE Schroeder, S Walsh, JBC Jackson, N Knowlton, E Sala. (2008) Baselines and degradation of coral reefs in the northern Line Islands. PLoS ONE. 3(2) e1584. 1-11.
Wegley, L, R Edwards, B Rodriguez-Brito, Hong Liu, F Rohwer (2007) Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environmental Microbiology. 9 (11). 2707-2719.
Beman, MJ, KJ Roberts, L Wegley, F Rohwer, CA Francis (2007) Distribution and diversity of archaeal ammonia monooxygenase (amoA) genes associated with corals. Applied and Environmental Microbiology. 73 (17). 5642-5647.
Rosenberg E, CA Kellogg, F Rohwer (2007) Coral microbiology. Oceanography. 20 (2) 114- 122.
Johnston IS, F Rohwer (2007) Microbial landscapes on the outer tissue surfaces of the reef- building coral Porites compressa. Coral Reefs. 26 (2). 375-383.
Smith JE, M Shaw, RA Edwards, M Hatay, D Obura, O Pantos, E Sala, SA Sandin, S Smriga, F Rohwer (2006) Effects of algae on coral: Algal-mediated, microbe-induced coral mortality. Ecology Letters. 9 (7). 835-845.
Kline, D, N Kuntz, M Brietbart, N Knowlton, F Rohwer (2006) The unexpected and critical role of elevated organic carbon in coral mortality. Marine Ecology Progress Series. 314. 119-125.
Kline, D, J Bryant, E Kisflaudy, G Rohwer, F Nostropaur, J Grayson, N Knowlton, F Rohwer (2006) The aquatic automated dosing and maintenance system (AADAMS). Limnology and Oceanography Methods. 4. 184-192.
Kuntz, NM, D Kline, SA Sandin, F Rohwer (2005) Organic carbon and nutrient stressors cause different pathologies and mortality rates in three Caribbean coral species. Marine Ecology Progress Series. 294. 173-180.
Breitbart, M, R Bhagooli, S Griffin, I Johnston, F Rohwer (2005) Microbial communities associated with skeletal tumors on Porites compressa. FEMS Microbiology Letters. 243. 431–
436. Hatay, M, N Kuntz, F Rohwer (2005) SPIDERS: A syringe pump system for long-term dosing underwater. Limnology and Oceanography Methods. 3. 38–45.
Wegley, L, Y Yu, M Breitbart, V Casas, D Kline, F Rohwer (2004) Coral-associated Archaea. Marine Ecology Progress Series. 273. 89-96.
F Rohwer and S Kelley (2004) Corals as Microbial Landscapes. In: E Rosenberg and Y Loya (eds). Coral Health and Disease. Book Chapter.
Casas, V, D Kline, L Wegley, Y Yu, M Breitbart, F Rohwer (2004) Bacterial communities associated with healthy and white band type I diseased Acroporid corals. Environmental Microbiology. 6(11). 1137-1148.
Knowlton, N, and F Rohwer (2003) Microbial mutualisms on coral reefs: The host as a habitat. American Naturalist. 162. S51-S62.
Rohwer, F, V Seguritan, F Azam, and N Knowlton. (2002) Diversity and distribution of coral- associated bacteria. Marine Ecology Progress Series. 243. 1-10.
Rohwer, F, M Breitbart, J Java, F Azam, N Knowlton (2001) Microbial diversity of scleractinian corals. Coral Reefs. 20 (1). 85-95.