Recent Publications

Weekly Highlighted Publication

Multiple meltwater discharge and ice rafting events recorded in the deglacial sediments along the Beaufort Margin, Arctic Ocean

Impact:
Thick, acoustically transparent Holocene sediment imaged from Barrow Canyon to the Mackenzie Trough indicates that discharge down Barrow Canyon and sediment from the Alaskan continent were important sources during this time period, possibly due to rivers reworking glacial sediment exposed by the retreat of glacier ice on the Brooks Range. Acoustically laminated sediments with coarser grain size and higher magnetic susceptibility underlie the Holocene unit. The acoustic reflectivity and thickness of this unit increases towards the Mackenzie Trough, suggesting that it is the main source of the acoustically laminated sediment, in addition to ice-rafted debris (IRD) from the Amundsen and M'Clure ice streams.

Search Recent Publications

  • Atwood S.A, Kreidenweis S.M, DeMott PJ, Petters M.D, Cornwell G.C, Martin A.C, Moore K.A.  2019.  Classification of aerosol population type and cloud condensation nuclei properties in a coastal California littoral environment using an unsupervised cluster model. Atmospheric Chemistry and Physics. 19:6931-6947.
    Abstract Summary:

    Aerosol particle and cloud condensation nuclei (CCN) measurements from a littoral location on the northern coast of California at Bodega Bay Marine Laboratory (BML) are presented for approximately six weeks of observations during the boreal winter-spring as part of the CalWater-2015 field campaign. The nature and variability of surface (marine boundary layer, MBL) aerosol populations were evaluated by classifying observations into periods of...

  • Mitovski T., Cole J.NS, McFarlane N.A, von Salzen K., Zhang GJ.  2019.  Convective response to large-scale forcing in the tropical western Pacific simulated by spCAM5 and CanAM4.3. Geoscientific Model Development. 12:2107-2117.
    Abstract Summary:

    Changes in the large-scale environment during convective precipitation events in the tropical western Pacific simulated by version 4.3 of the Canadian Atmospheric Model (CanAM4.3) are compared against those simulated by version 5.0 of the super-parameterized Community Atmosphere Model (spCAM5). This is done by compositing sub-hourly output of convective rainfall, convective available potential energy (CAPE), CAPE generation due to large-scale...

  • Broddrick J.T, Du N., Smith S.R, Tsuji Y., Jallet D., Ware M.A, Peers G., Matsuda Y., Dupont C.L, Mitchell B.G et al..  2019.  Cross-compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum. New Phytologist. 222:1364-1379.
    Abstract Summary:

    Photoacclimation consists of short- and long-term strategies used by photosynthetic organisms to adapt to dynamic light environments. Observable photophysiology changes resulting from these strategies have been used in coarse-grained models to predict light-dependent growth and photosynthetic rates. However, the contribution of the broader metabolic network, relevant to species-specific strategies and fitness, is not accounted for in these...

  • Vic C., Garabato A.CN, Green J.AM, Waterhouse A.F, Zhao Z.X, Melet A., de Lavergne C., Buijsman M.C, Stephenson G.R.  2019.  Deep-ocean mixing driven by small-scale internal tides. 10
    Abstract Summary:

    Turbulent mixing in the ocean is key to regulate the transport of heat, freshwater and biogeochemical tracers, with strong implications for Earth's climate. In the deep ocean, tides supply much of the mechanical energy required to sustain mixing via the generation of internal waves, known as internal tides, whose fate-the relative importance of their local versus remote breaking into turbulence-remains uncertain. Here, we combine a semi-...

  • Abstract Summary:

    Na+/K+-ATPase (NKA)- and vacuolar H+-ATPase (VHA)-rich cells in shark gills secrete excess acid and base, respectively, to seawater to maintain blood acid-base homeostasis. Both cell types are rich in mitochondria, indicating high ATP demand; however, their metabolic fuel is unknown. Here, we report that NKA- and VHA-rich cells have large glycogen stores. Glycogen abundance in NKA-rich cells was lower in starved sharks compared with 24 h post...

  • Hetherington E.D, Kurle C.M, Ohman MD, Popp BN.  2019.  Effects of chemical preservation on bulk and amino acid isotope ratios of zooplankton, fish, and squid tissues. 33:935-945.
    Abstract Summary:

    Rationale It is imperative to understand how chemical preservation alters tissue isotopic compositions before using historical samples in ecological studies. Specifically, although compound-specific isotope analysis of amino acids (CSIA-AA) is becoming a widely used tool, there is little information on how preservation techniques affect amino acid delta N-15 values. Methods We evaluated the effects of chemical preservatives on bulk tissue...

  • Eddebbar Y.A, Rodgers K.B, Long M.C, Subramanian AC, Xie SP, Keeling RF.  2019.  El Nino-like physical and biogeochemical ocean response to tropical eruptions. Journal of Climate. 32:2627-2649.
    Abstract Summary:

    The oceanic response to recent tropical eruptions is examined in Large Ensemble (LE) experiments from two fully coupled global climate models, the Community Earth System Model (CESM) and the Geophysical Fluid Dynamics Laboratory Earth System Model (ESM2M), each forced by a distinct volcanic forcing dataset. Following the simulated eruptions of Agung, El Chichon, and Pinatubo, the ocean loses heat and gains oxygen and carbon, in general...

  • Olli K., Halvorsen E., Vernet M, Lavrentyev P.J, Franze G., Sanz-Martin M., Paulsen M.L, Reigstad M..  2019.  Food web functions and interactions during spring and summer in the Arctic Water inflow region: Investigated through inverse modeling. 6
    Abstract Summary:

    We used inverse modeling to reconstruct major planktonic food web carbon flows in the Atlantic Water inflow, east and north of Svalbard during spring (18-25 May) and summer (9-13 August), 2014. The model was based on three intensively sampled stations during both periods, corresponding to early, peak, and decline phases of a Phaeocystis and diatom dominated bloom (May), and flagellates dominated post bloom stages (August). The food web carbon...

  • Young A.P, Carilli JE.  2019.  Global distribution of coastal cliffs. 44:1309-1316.
    Abstract Summary:

    Previous studies have estimated that coastal cliffs exist on about 80% of the global shoreline, but have not been validated on a global scale. This study uses two approaches to capture information on the worldwide existence and erosion of coastal cliffs: a detailed literature survey and imagery search, and a GIS-based global mapping analysis. The literature and imagery review show coastal cliffs exist in 93% of the combined recognized...

  • Roarty H., Cook T., Hazard L, George D., Harlan J., Cosoli S., Wyatt L., Fanjul E.A, Terrill E, Otero M et al..  2019.  The global high frequency radar network. 6
    Abstract Summary:

    Academic, government, and private organizations from around the globe have established High Frequency radar (hereinafter, HFR) networks at regional or national levels. Partnerships have been established to coordinate and collaborate on a single global HFR network (http://global-hfradar.org/) . These partnerships were established in 2012 as part of the Group on Earth Observations (GEO) to promote HFR...

  • Morrow R., Fu L.L, Ardhuin F., Benkiran M., Chapron B., Cosme E., D'Ovidio F., Farrar J.T, Gille ST, Lapeyre G. et al..  2019.  Global observations of fine-scale ocean surface topography with the Surface Water and Ocean Topography (SWOT) mission. 6
    Abstract Summary:

    The future international Surface Water and Ocean Topography (SWOT) Mission, planned for launch in 2021, will make high-resolution 2D observations of sea-surface height using SAR radar interferometric techniques. SWOT will map the global and coastal oceans up to 77.6 degrees latitude every 21 days over a swath of 120 km (20 km nadir gap). Today's 2D mapped altimeter data can resolve ocean scales of 150 km wavelength whereas the SWOT...

  • Levin L.A, Bett B.J, Gates A.R, Heimbach P., Howe B.M, Janssen F., McCurdy A., Ruhl H.A, Snelgrove P., Stocks K.I et al..  2019.  Global observing needs in the deep ocean. 6
    Abstract Summary:

    The deep ocean below 200 m water depth is the least observed, but largest habitat on our planet by volume and area. Over 150 years of exploration has revealed that this dynamic system provides critical climate regulation, houses a wealth of energy, mineral, and biological resources, and represents a vast repository of biological diversity. A long history of deep-ocean exploration and observation led to the initial concept for the Deep-Ocean...

  • Jamet C., Ibrahim A., Ahmad Z., Angelini F., Babin M., Behrenfeld M.J, Boss E., Cairns B., Churnside J., Chowdhary J. et al..  2019.  Going beyond standard ocean color observations: Lidar and polarimetry. 6
    Abstract Summary:

    Passive ocean color images have provided a sustained synoptic view of the distribution of ocean optical properties and color and biogeochemical parameters for the past 20-plus years. These images have revolutionized our view of the ocean. Remote sensing of ocean color has relied on measurements of the radiance emerging at the top of the atmosphere, thus neglecting the polarization and the vertical components. Ocean color remote sensing...

  • White-Gaynor A.L, Nyblade A.A, Aster R.C, Wiens D.A, Bromirski PD, Gerstoft P, Stephen R.A, Hansen S.E, Wilson T., Dalziel I.W et al..  2019.  Heterogeneous upper mantle structure beneath the Ross Sea Embayment and Marie Byrd Land, West Antarctica, revealed by P-wave tomography. Earth and Planetary Science Letters. 513:40-50.
    Abstract Summary:

    We present an upper mantle P-wave velocity model for the Ross Sea Embayment (RSE) region of West Antarctica, constructed by inverting relative P-wave travel-times from 1881 teleseismic earthquakes recorded by two temporary broadband seismograph deployments on the Ross Ice Shelf, as well as by regional ice- and rock-sited seismic stations surrounding the RSE. Faster upper mantle P-wave velocities (similar to +1%) characterize the eastern part...

  • Zigone D., Ben-Zion Y., Lehujeur M., Campillo M., Hillers G., Vernon FL.  2019.  Imaging subsurface structures in the San Jacinto fault zone with high-frequency noise recorded by dense linear arrays. 217:879-893.
    Abstract Summary:

    Cross-correlations of 2-35 Hz ambient seismic noise recorded by three linear arrays across the San Jacinto Fault Zone (SJFZ) in Southern California are used to derive high-resolution shear wave velocity models for the top 50-90m of the crust at the array locations. Coherent Rayleigh surface waves are inverted to construct 2-D maps of group velocities in the range 0.2-0.6 km s(-1). These maps are inverted to shear wave velocities around the...

  • Rigby M, Park S., Saito T., Western L.M, Redington A.L, Fang X., Henne S., Manning A.J, Prinn RG, Dutton GS et al..  2019.  Increase in CFC-11 emissions from eastern China based on atmospheric observations. 569:546-+.
    Abstract Summary:

    The recovery of the stratospheric ozone layer relies on the continued decline in the atmospheric concentrations of ozone-depleting gases such as chlorofluorocarbons(1). The atmospheric concentration of trichlorofluoromethane (CFC-11), the second-most abundant chlorofluorocarbon, has declined substantially since the mid-1990s(2). A recently reported slowdown in the decline of the atmospheric concentration of CFC-11 after 2012, however,...

  • Abstract Summary:

    For dengue fever and other seasonal epidemics we show how the stability of the preceding inter-outbreak period can predict subsequent total outbreak magnitude, and that a feasible stability metric can be computed from incidence data alone. As an observable of a dynamical system, incidence data contains information about the underlying mechanisms: climatic drivers, changing serotype pools, the ecology of the vector populations, and evolving...

  • DeSanto J.B, Chadwell C.D, Sandwell DT.  2019.  Kinematic post-processing of ship navigation data using precise point positioning. 72:795-804.
    Abstract Summary:

    Seafloor geodetic studies such as Global Positioning System (GPS)-Acoustic experiments often require the measurement platform on the sea surface to be positioned accurately to within a few centimetres. In this paper, we test the utility of Precise Point Positioning (PPP) for this application with two experiments. The first fixed platform experiment is a comparison between three independent processing software packages: Positioning and...

  • Sharma A., Richardson M., Cralle L., Stamper C.E, Maestre J.P, Stearns-Yoder K.A, Postolache T.T, Bates K.L, Kinney K.A, Brenner L.A et al..  2019.  Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets. 7
    Abstract Summary:

    The microbiome of the built environment has important implications for human health and wellbeing; however, bidirectional exchange of microbes between occupants and surfaces can be confounded by lifestyle, architecture, and external environmental exposures. Here, we present a longitudinal study of United States Air Force Academy cadets (n=34), which have substantial homogeneity in lifestyle, diet, and age, all factors that influence the human...

  • Lee T., Fournier S., Gordon A.L, Sprintall J.  2019.  Maritime Continent water cycle regulates low-latitude chokepoint of global ocean circulation. 10
    Abstract Summary:

    The Maritime Continent (MC) is a low-latitude chokepoint of the world oceans with the Indonesian throughflow (ITF) linking the Indo-Pacific oceans, influencing global ocean circulation, climate, and biogeochemistry. While previous studies suggested that South-China-Sea freshwaters north of the MC intruding the Indonesian Seas weaken the ITF during boreal winter, the impact of the MC water cycle on the ITF has not been investigated. Here we...

  • Abstract Summary:

    We evaluated the performance of a recently developed absorption partitioning model [J. Geophys. Res. Oceans 120, 2601 (2015)] that derives the spectral absorption coefficients of non-algal particles, a(NAP)(lambda), and colored dissolved organic matter, a(g)(lambda), from the total absorption coefficient of seawater. The model's performance was found unsatisfactory when the model was tested with a large dataset of absorption measurements from...

  • Wang Q., Zhang S.P, Xie SP, Norris J.R, Sun J.X, Jiang Y.X.  2019.  Observed variations of the atmospheric boundary layer and stratocumulus over a warm eddy in the Kuroshio Extension. 147:1581-1591.
    Abstract Summary:

    A research vessel sailing across a warm eddy in the Kuroshio Extension on 13 April 2016 captured an abrupt development of stratocumulus under synoptic high pressure. Shipboard observations and results from regional atmospheric model simulations indicate that increased surface heat flux over the ocean eddy lowered surface pressure and thereby accelerated southeasterly winds. The southeasterly winds transported moisture toward the low pressure...

  • Abstract Summary:

    Atmospheric rivers (ARs), intense water vapor transports associated with extra-tropical cyclones, frequently bring heavy rainfalls over mid-latitudes. Over East Asia, landfalling ARs result in major socio-economic impacts including widespread floods and landslides; for example, western Japan heavy rainfall in July 2018 killed more than 200 people. Using results of high-resolution atmospheric model ensemble simulations, we examine projected...

  • Carter BR, Feely R.A, Wanninkhof R, Kouketsu S., Sonnerup R.E, Pardo P.C, Sabine C.L, Johnson G.C, Sloyan BM, Murata A. et al..  2019.  Pacific anthropogenic carbon between 1991 and 2017. 33:597-617.
    Abstract Summary:

    We estimate anthropogenic carbon (C-anth) accumulation rates in the Pacific Ocean between 1991 and 2017 from 14 hydrographic sections that have been occupied two to four times over the past few decades, with most sections having been recently measured as part of the Global Ocean Ship-based Hydrographic Investigations Program. The rate of change of C-anth is estimated using a new method that combines the extended multiple linear regression...

  • Abstract Summary:

    Dissolved noble gases are ideal conservative tracers of physical processes in the Earth system due to their chemical and biological inertness. Although bulk concentrations of dissolved Ar, Kr, and Xe are commonly measured to constrain physical models of atmosphere, ocean, and terrestrial hydrosphere processes, stable isotope ratios of these gases (e.g. Xe-136/Xe-129) are seldom used because of low signal-to-noise ratios. Here we present the...

  • Makarim S., Sprintall J, Liu Z, Yu W., Santoso A., Yan X.H, Susanto R.D.  2019.  Previously unidentified Indonesian Throughflow pathways and freshening in the Indian Ocean during recent decades. 9
    Abstract Summary:

    The Earth has experienced a global surface warming slowdown (GSWS) or so-called "global warming hiatus" since the end of the 20th century. The GSWS was marked by a La Nina-like decadal cooling in the Pacific Ocean that subsequently generated an increase in the transfer of Pacific waters into the Indian Ocean via the Indonesian Throughflow (ITF). How the Pacific water spreads through the interior of the Indian Ocean and the impact of these...

  • Bauman K.D, Li J., Murata K., Mantovani S.M, Dahesh S., Nizet V., Luhavaya H., Moore BS.  2019.  Refactoring the cryptic streptophenazine biosynthetic gene cluster unites phenazine, polyketide, and nonribosomal peptide biochemistry. 26:724-+.
    Abstract Summary:

    The disconnect between the genomic prediction of secondary metabolite biosynthetic potential and the observed laboratory production profile of microorganisms is well documented. While heterologous expression of biosynthetic gene clusters (BGCs) is often seen as a potential solution to bridge this gap, it is not immune to many challenges including impaired regulation, the inability to recruit essential building blocks, and transcriptional and/...

  • Ramirez-Reyes C., Brauman K.A, Chaplin-Kramer R., Galford G.L, Adamo S.B, Anderson C.B, Anderson C., Allington G.RH, Bagstad K.J, Coe M.T et al..  2019.  Reimagining the potential of Earth observations for ecosystem service assessments. Science of the Total Environment. 665:1053-1063.
    Abstract Summary:

    The benefits nature provides to people, called ecosystem services, are increasingly recognized and accounted for in assessments of infrastructure development, agricultural management, conservation prioritization, and sustainable sourcing. These assessments are often limited by data, however, a gap with tremendous potential to be filled through Earth observations (EO), which produce a variety of data across spatial and temporal extents and...

  • Matusik K.E, Smith SGL.  2019.  The response of surface buoyancy flux-driven convection to localized mechanical forcing. Experiments in Fluids. 60
    Abstract Summary:

    We present laboratory experiments in which both a buoyancy and mechanical forcing are imposed on the surface of a rectangular tank filled with freshwater. The buoyancy forcing is generated by a saltwater source at the surface that drives a sinking half-line plume along one endwall, and the mechanical forcing is generated by a continuous flow of freshwater across the surface of the tank. A steady-state circulation is achieved when the...

  • Mackenzie B., Celliers L., Assad L.PD, Heymans J.J, Rome N., Thomas J., Anderson C., Behrens J., Calverley M., Desai K. et al..  2019.  The role of stakeholders in creating societal value from coastal and ocean observations. 6
    Abstract Summary:

    The importance of stakeholder engagement in ocean observation and in particular the realization of economic and societal benefits is discussed, introducing a number of overarching principles such as the convergence on common goals, effective communication, co-production of information and knowledge and the need for innovation. A series of case studies examine the role of coordinating frameworks such as the United States' Interagency Ocean...

  • Anderson C.R, Berdalet E., Kudela R.M, Cusack C.K, Silke J., O'Rourke E., Dugan D., McCammon M., Newton J.A, Moore S.K et al..  2019.  Scaling up from regional case studies to a global Harmful Algal Bloom observing system. 6
    Abstract Summary:

    Harmful algal blooms (HABs) produce local impacts in nearly all freshwater and marine systems. They are a problem that occurs globally requiring an integrated and coordinated scientific understanding, leading to regional responses and solutions. Given that these natural phenomena will never be completely eliminated, an improved scientific understanding of HAB dynamics coupled with monitoring and ocean observations, facilitates new prediction...

  • Ross Z.E, Trugman D.T, Hauksson E., Shearer PM.  2019.  Searching for hidden earthquakes in Southern California. 364:767-+.
    Abstract Summary:

    Earthquakes follow a well-known power-law size relation, with smaller events occurring much more often than larger events. Earthquake catalogs are thus dominated by small earthquakes yet are still missing a much larger number of even smaller events because of signal fidelity issues. To overcome these limitations, we applied a template-matching detection technique to the entire waveform archive of the regional seismic network in Southern...

  • Beguelin P., Bizimis M., McIntosh E.C, Cousens B., Clague D.A.  2019.  Sources vs processes: Unraveling the compositional heterogeneity of rejuvenated-type Hawaiian magmas. 514:119-129.
    Abstract Summary:

    Spatial isotope variations in oceanic island basalts hold clues to the geochemical structure of mantle plumes. This signal is however susceptible to contributions from non-plume sources and modifications by physical processing in the upper mantle, i.e. source hybridization and segregation through gradients in melting conditions. A comprehensive survey of lava isotope systematics is therefore necessary to reveal spatiotemporal patterns at the...

  • Page H.N, Courtney T.A, De Carlo E.H, Howins N.M, Koester I., Andersson AJ.  2019.  Spatiotemporal variability in seawater carbon chemistry for a coral reef flat in Kane'ohe Bay, Hawai'i. 64:913-934.
    Abstract Summary:

    Coral reef community composition and ecosystem function may change in response to anthropogenic ocean acidification. However, the magnitude of acidification on reefs will be modified by natural spatial and temporal variability in seawater CO2 chemistry. Consequently, it is necessary to quantify the ecological, biogeochemical, and physical drivers of this natural variability before making robust predictions of future acidification on reefs. In...

  • Yadav V., Duren R., Mueller K., Verhulst K.R, Nehrkorn T., Kim J., Weiss RF, Keeling R., Sander S., Fischer M.L et al..  2019.  Spatio-temporally resolved methane fluxes from the Los Angeles megacity. 124:5131-5148.
    Abstract Summary:

    We combine sustained observations from a network of atmospheric monitoring stations with inverse modeling to uniquely obtain spatiotemporal (3-km, 4-day) estimates of methane emissions from the Los Angeles megacity and the broader South Coast Air Basin for 2015-2016. Our inversions use customized and validated high-fidelity meteorological output from Weather Research Forecasting and Stochastic Time-Inverted Lagrangian model for South Coast...

  • Jagannathan A., Winters K., Armi L..  2019.  Stratified flows over and around long dynamically tall mountain ridges. 76:1265-1287.
    Abstract Summary:

    Uniformly stratified flows approaching long and dynamically tall ridges develop two distinct flow components over disparate time scales. The fluid upstream and below a "blocking level" is stagnant in the limit of an infinite ridge and flows around the sides when the ridge extent is finite. The streamwise half-width of the obstacle at the blocking level arises as a natural inner length scale for the flow, while the excursion time over this...

  • McCormick L.R, Levin L.A, Oesch N.W.  2019.  Vision is highly sensitive to oxygen availability in marine invertebrate larvae. 222
    Abstract Summary:

    For many animals, evolution has selected for complex visual systems despite the high energetic demands associated with maintaining eyes and their processing structures. Therefore, the metabolic demands of visual systems make them highly sensitive to fluctuations in available oxygen. In the marine environment, oxygen changes over daily, seasonal and inter-annual time scales, and there are large gradients of oxygen with depth. Vision is linked...

  • Glotfelty T., Alapaty K., He J., Hawbecker P., Song X.L, Zhang G..  2019.  The Weather Research and Forecasting Model with Aerosol-Cloud Interactions (WRF-ACI): Development, evaluation, and initial application. 147:1491-1511.
    Abstract Summary:

    The Weather Research and Forecasting Model with Aerosol-Cloud Interactions (WRF-ACI) is developed for studying aerosol effects on gridscale and subgrid-scale clouds using common aerosol activation and ice nucleation formulations and double-moment cloud microphysics in a scale-aware subgrid-scale parameterization scheme. Comparisons of both the standard WRF and WRF-ACI models' results for a summer season against satellite and reanalysis...

  • Williams C.L, Sato K., Ponganis P.J.  2019.  Activity, not submergence, explains diving heart rates of captive loggerhead sea turtles. Journal of Experimental Biology. 222
    Abstract Summary:

    Marine turtles spend their life at sea and can rest on the seafloor for hours. As air-breathers, the breath-hold capacity of marine turtles is a function of oxygen (O-2) stores, O-2 consumption during dives and hypoxia tolerance. However, some physiological adaptations to diving observed in mammals are absent in marine turtles. This study examined cardiovascular responses in loggerhead sea turtles, which have even fewer adaptations to diving...

  • Tayler N.M, Boya C.A, Herrera L., Moy J., Ng M., Pineda L., Almanza A., Rosero S., Coronado L.M, Correa R. et al..  2019.  Analysis of the antiparasitic and anticancer activity of the coconut palm (Cocos nucifera L. ARECACEAE) from the natural reserve of Punta Patino, Darien. Plos One. 14
    Abstract Summary:

    Cocos nucifera (C. nucifera) (the coconut palm tree) has been traditionally used to fight a number of human diseases, but only a few studies have tested its components against parasites such as those that cause malaria. In this study, C. nucifera samples were collected from a private natural reserve in Punta Patino, Darien, Panama. The husk, leaves, pulp, and milk of C. nucifera were extracted and evaluated against the parasites that cause...

  • Ralph FM, Wilson A.M, Shulgina T., Kawzenuk B., Sellars S., Rutz J.J, Lamjiri M.A, Barnes E.A, Gershunov A, Guan B. et al..  2019.  ARTMIP-early start comparison of atmospheric river detection tools: how many atmospheric rivers hit northern California's Russian River watershed? Climate Dynamics. 52:4973-4994.
    Abstract Summary:

    Many atmospheric river detection tools (ARDTs) have now been developed. However, their relative performance is not well documented. This paper compares a diverse set of ARDTs by applying them to a single location where a unique 12-year-long time-series from an atmospheric river observatory at Bodega Bay, California is available. The study quantifies the sensitivity of the diagnosed number, duration, and intensity of ARs at this location to...

  • Martinez-Ruiz F., Paytam A., Gonzalez-Munoz M.T, Jroundi F., Abad M.M, Lam P.J, Bishop J.KB, Horner T.J, Morton P.L, Kastner M..  2019.  Barite formation in the ocean: Origin of amorphous and crystalline precipitates. Chemical Geology. 511:441-451.
    Abstract Summary:

    Ocean export production is a key constituent in the global carbon cycle impacting climate. Past ocean export production is commonly estimated by means of barite and Barium proxies. However, the precise mechanisms underlying barite precipitation in the undersaturated marine water column are not fully understood. Here we present a detailed mineralogical and crystallographic analysis of barite from size-fractionated particulate material...

  • Diaz-Isaac L.I, Lauvaux T., Bocquet M., Davis K.J.  2019.  Calibration of a multi-physics ensemble for estimating the uncertainty of a greenhouse gas atmospheric transport model. Atmospheric Chemistry and Physics. 19:5695-5718.
    Abstract Summary:

    Atmospheric inversions have been used to assess biosphere-atmosphere CO2 surface exchanges at various scales, but variability among inverse flux estimates remains significant, especially at continental scales. Atmospheric transport errors are one of the main contributors to this variability. To characterize transport errors and their spatiotemporal structures, we present an objective method to generate a calibrated ensemble adjusted with...

  • Poudel S., Tsunemoto H., Meehan M., Szubin R., Olson C.A, Lamsa A., Seif Y., Dillon N., Vrbanac A., Sugie J. et al..  2019.  Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media. Scientific Data. 6
    Abstract Summary:

    Cation adjusted-Mueller Hinton Broth (CA-MHB) is the standard bacteriological medium utilized in the clinic for the determination of antibiotic susceptibility. However, a growing number of literature has demonstrated that media conditions can cause a substantial difference in the efficacy of antibiotics and antimicrobials. Recent studies have also shown that minimum inhibitory concentration (MIC) tests performed in standard cell culture media...

  • Sielaff A.C, Urbaniak C., Mohan G.BM, Stepanov V.G, Tran Q., Wood J.M, Minich J., McDonald D., Mayer T., Knight R. et al..  2019.  Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces. 7
    Abstract Summary:

    BackgroundThe International Space Station (ISS) is a closed system inhabited by microorganisms originating from life support systems, cargo, and crew that are exposed to unique selective pressures such as microgravity. To date, mandatory microbial monitoring and observational studies of spacecraft and space stations have been conducted by traditional culture methods, although it is known that many microbes cannot be cultured with standard...

  • Shearer PM, Abercrombie R.E, Trugman D.T, Wang W..  2019.  Comparing EGF methods for estimating corner frequency and stress drop from p wave spectra. Journal of Geophysical Research-Solid Earth. 124:3966-3986.
    Abstract Summary:

    Empirical Green's functions (EGFs) are widely applied to correct earthquake spectra for attenuation and other path effects in order to estimate corner frequencies and stress drops, but these source parameter estimates often exhibit poor agreement between different studies. We examine this issue by analyzing a compact cluster of over 3,000 aftershocks of the 1992 Landers earthquake. We apply and compare two different analysis and modeling...

  • Jenkins W.J, Doney SC, Fendrock M., Fine R., Gamo T., Jean-Baptiste P., Key R., Klein B., Lupton J.E, Newton R. et al..  2019.  A comprehensive global oceanic dataset of helium isotope and tritium measurements. Earth System Science Data. 11:441-454.
    Abstract Summary:

    Tritium and helium isotope data provide key information on ocean circulation, ventilation, and mixing, as well as the rates of biogeochemical processes and deep-ocean hydrothermal processes. We present here global oceanic datasets of tritium and helium isotope measurements made by numerous researchers and laboratories over a period exceeding 60 years. The dataset's DOI is https://doi.org/10.25921/...

  • Abstract Summary:

    The encounter and capture of bacteria and phytoplankton by microbial predators and parasites is fundamental to marine ecosystem organization and activity. Here, we combined classic biophysical models with published laboratory measurements to infer functional traits, including encounter kernel and capture efficiency, for a wide range of marine viruses and microzooplankton grazers. Despite virus particles being orders of magnitude smaller than...

  • Martin A.C, Cornwell G., Beall C.M, Cannon F., Reilly S., Schaap B., Lucero D., Creamean J., Ralph FM, Mix H.T et al..  2019.  Contrasting local and long-range-transported warm ice-nucleating particles during an atmospheric river in coastal California, USA. Atmospheric Chemistry and Physics. 19:4193-4210.
    Abstract Summary:

    Ice-nucleating particles (INPs) have been found to influence the amount, phase and efficiency of precipitation from winter storms, including atmospheric rivers. Warm INPs, those that initiate freezing at temperatures warmer than -10 degrees C, are thought to be particularly impactful because they can create primary ice in mixed-phase clouds, enhancing precipitation efficiency. The dominant sources of warm INPs during atmospheric rivers, the...

  • Johnson L.E, Kingsbury J.S, Elder D.L, Cattolico R.A, Latimer L.N, Hardin W., De Meulenaere E., Deodato C., Depotter G., Madabushi S. et al..  2019.  DANPY (dimethylaminonaphthylpyridinium): an economical and biocompatible fluorophore. Organic & Biomolecular Chemistry. 17:3765-3780.
    Abstract Summary:

    Dyes with nonlinear optical (NLO) properties enable new imaging techniques and photonic systems. We have developed a dye (DANPY-1) for photonics applications in biological substrates such as nucleic acids; however, the design specification also enables it to be used for visualizing biomolecules. It is a prototype dye demonstrating a water-soluble, NLO-active fluorophore with high photostability, a large Stokes shift, and a favorable toxicity...

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