Genomics, Metagenomics, and Bioinformatics

Most Recent Publications

Metagenomic Discovery Of Polybrominated Diphenyl Ether Biosynthesis By Marine Sponges (2017) [10.1038/nchembio.2330]
Agarwal, V.; Blanton, J. M.; Podell, S.; Taton, A.; Schorn, M. A.; Busch, J.; Lin, Z. J.; Schmidt, E. W.; Jensen, P. R.; Paul, V. J.; Biggs, J. S.; Golden, J. W.; Allen, E. E.; Moore, B. S.
Streptomyces Artemisiae MCCB 248 Isolated From Arctic Fjord Sediments Has Unique PKS And NRPS Biosynthetic Genes And Produces Potential New Anticancer Natural Products (2017) [10.1007/s13205-017-0610-3]
Dhaneesha, M.; Naman, C. B.; Krishnan, K. P.; Sinha, R. K.; Jayesh, P.; Joseph, V.; Singh, I. S. B.; Gerwick, W. H.; Sajeevan, T. P.
Copper Toxicity Response Influences Mesotrophic Synechococcus Community Structure (2017) [10.1111/1462-2920.13630]
Stuart, R. K.; Bundy, R.; Buck, K.; Ghassemain, M.; Barbeau, K.; Palenik, B.
Metagenomic Covariation Along Densely Sampled Environmental Gradients In The Red Sea (2017) [10.1038/ismej.2016.99]
Thompson, L. R.; Williams, G. J.; Haroon, M. F.; Shibl, A.; Larsen, P.; Shorenstein, J.; Knight, R.; Stingl, U.
Indexing The Pseudomonas Specialized Metabolome Enabled The Discovery Of Poaeamide B And The Bananamides (2017) [10.1038/nmicrobiol.2016.197]
Nguyen, D. D.; Melnik, A. V.; Koyama, N.; Lu, X. W.; Schorn, M.; Fang, J. S.; Aguinaldo, K.; Lincecum, T. L.; Ghequire, M. G. K.; Carrion, V. J.; Cheng, T. L.; Duggan, B. M.; Malone, J. G.; Mauchline, T. H.; Sanchez, L. M.; Kilpatrick, A. M.; Raaijmakers, J. M.; De Mot, R.; Moore, B. S.; Medema, M. H.; Dorrestein, P. C.
Expanding The Repertoire Of Carbapenem-Hydrolyzing Metallo-ss-Lactamases By Functional Metagenomic Analysis Of Soil Microbiota (2016) [10.3389/fmicb.2016.01985]
Gudeta, D. D.; Bortolaia, V.; Pollini, S.; Docquier, J. D.; Rossolini, G. M.; Amos, G. C. A.; Wellington, E. M. H.; Guardabassi, L.
Sequencing Rare Marine Actinomycete Genomes Reveals High Density Of Unique Natural Product Biosynthetic Gene Clusters (2016) [10.1099/mic.0.000386]
Schorn, M. A.; Alanjary, M. M.; Aguinaldo, K.; Korobeynikov, A.; Podell, S.; Patin, N.; Lincecum, T.; Jensen, P. R.; Ziemert, N.; Moore, B. S.
Unique Attributes Of Cyanobacterial Metabolism Revealed By Improved Genome-scale Metabolic Modeling And Essential Gene Analysis (2016) [10.1073/pnas.1613446113]
Broddrick, J. T.; Rubin, B. E.; Welkie, D. G.; Du, N.; Mih, N.; Diamond, S.; Lee, J. J.; Golden, S. S.; Palsson, B. O.
Integrated Regulatory And Metabolic Networks Of The Marine Diatom Phaeodactylum Tricornutum Predict The Response To Rising CO2 Levels (2017) [10.1128/mSystems.00142-16]
Levering, Jennifer; Dupont, Christopher L.; Allen, Andrew E.; Palsson, Bernhard O.; Zengler, Karsten; Lin, Xiaoxia
The Baltic Sea Virome: Diversity And Transcriptional Activity Of DNA And RNA Viruses (2017) [10.1128/mSystems.00125-16]
Zeigler Allen, Lisa; McCrow, John P.; Ininbergs, Karolina; Dupont, Christopher L.; Badger, Jonathan H.; Hoffman, Jeffery M.; Ekman, Martin; Allen, Andrew E.; Bergman, Birgitta; Venter, J. Craig; Weitz, Joshua
Probing The Evolution, Ecology And Physiology Of Marine Protists Using Transcriptomics (2017) [10.1038/nrmicro.2016.160]
Caron, David A.; Alexander, Harriet; Allen, Andrew E.; Archibald, John M.; Armbrust, E. Virginia; Bachy, Charles; Bell, Callum J.; Bharti, Arvind; Dyhrman, Sonya T.; Guida, Stephanie M.; Heidelberg, Karla B.; Kaye, Jonathan Z.; Metzner, Julia; Smith, Sarah R.; Worden, Alexandra Z.