Genomics, Metagenomics, and Bioinformatics

Most Recent Publications

Expanding The Repertoire Of Carbapenem-Hydrolyzing Metallo-ss-Lactamases By Functional Metagenomic Analysis Of Soil Microbiota (2016) [10.3389/fmicb.2016.01985]
Gudeta, D. D.; Bortolaia, V.; Pollini, S.; Docquier, J. D.; Rossolini, G. M.; Amos, G. C. A.; Wellington, E. M. H.; Guardabassi, L.
Sequencing Rare Marine Actinomycete Genomes Reveals High Density Of Unique Natural Product Biosynthetic Gene Clusters (2016) [10.1099/mic.0.000386]
Schorn, M. A.; Alanjary, M. M.; Aguinaldo, K.; Korobeynikov, A.; Podell, S.; Patin, N.; Lincecum, T.; Jensen, P. R.; Ziemert, N.; Moore, B. S.
Unique Attributes Of Cyanobacterial Metabolism Revealed By Improved Genome-scale Metabolic Modeling And Essential Gene Analysis (2016) [10.1073/pnas.1613446113]
Broddrick, J. T.; Rubin, B. E.; Welkie, D. G.; Du, N.; Mih, N.; Diamond, S.; Lee, J. J.; Golden, S. S.; Palsson, B. O.
Integrated Regulatory And Metabolic Networks Of The Marine Diatom Phaeodactylum Tricornutum Predict The Response To Rising CO2 Levels (2017) [10.1128/mSystems.00142-16]
Levering, Jennifer; Dupont, Christopher L.; Allen, Andrew E.; Palsson, Bernhard O.; Zengler, Karsten; Lin, Xiaoxia
The Baltic Sea Virome: Diversity And Transcriptional Activity Of DNA And RNA Viruses (2017) [10.1128/mSystems.00125-16]
Zeigler Allen, Lisa; McCrow, John P.; Ininbergs, Karolina; Dupont, Christopher L.; Badger, Jonathan H.; Hoffman, Jeffery M.; Ekman, Martin; Allen, Andrew E.; Bergman, Birgitta; Venter, J. Craig; Weitz, Joshua
Probing The Evolution, Ecology And Physiology Of Marine Protists Using Transcriptomics (2017) [10.1038/nrmicro.2016.160]
Caron, David A.; Alexander, Harriet; Allen, Andrew E.; Archibald, John M.; Armbrust, E. Virginia; Bachy, Charles; Bell, Callum J.; Bharti, Arvind; Dyhrman, Sonya T.; Guida, Stephanie M.; Heidelberg, Karla B.; Kaye, Jonathan Z.; Metzner, Julia; Smith, Sarah R.; Worden, Alexandra Z.
Genome And Methylome Of The Oleaginous Diatom Cyclotella Cryptica Reveal Genetic Flexibility Toward A High Lipid Phenotype (2016) [10.1186/s13068-016-0670-3]
Traller, Jesse C.; Cokus, Shawn J.; Lopez, David A.; Gaidarenko, Olga; Smith, Sarah R.; McCrow, John P.; Gallaher, Sean D.; Podell, Sheila; Thompson, Michael; Cook, Orna; Morselli, Marco; Jaroszewicz, Artur; Allen, Eric E.; Allen, Andrew E.; Merchant, Sabeeha S.; Pellegrini, Matteo; Hildebrand, Mark
Transcriptional Orchestration Of The Global Cellular Response Of A Model Pennate Diatom To Diel Light Cycling Under Iron Limitation (2016) [10.1371/journal.pgen.1006490]
Smith, Sarah R.; Gillard, Jeroen T. F.; Kustka, Adam B.; McCrow, John P.; Badger, Jonathan H.; Zheng, Hong; New, Ashley M.; Dupont, Chris L.; Obata, Toshihiro; Fernie, Alisdair R.; Allen, Andrew E.
Evolutionary Genomics Of The Cold-adapted Diatom Fragilariopsis Cylindrus (2017) [10.1038/nature20803]
Mock, Thomas; Otillar, Robert P.; Strauss, Jan; McMullan, Mark; Paajanen, Pirita; Schmutz, Jeremy; Salamov, Asaf; Sanges, Remo; Toseland, Andrew; Ward, Ben J.; Allen, Andrew E.; Dupont, Christopher L.; Frickenhaus, Stephan; Maumus, Florian; Veluchamy, Alaguraj; Wu, Taoyang; Barry, Kerrie W.; Falciatore, Angela; Ferrante, Maria I.; Fortunato, Antonio E.; Glöckner, Gernot; Gruber, Ansgar; Hipkin, Rachel; Janech, Michael G.; Kroth, Peter G.; Leese, Florian; Lindquist, Erika A.; Lyon, Barbara R.; Martin, Joel; Mayer, Christoph; Parker, Micaela; Quesneville, Hadi; Raymond, James A.; Uhlig, Christiane; Valas, Ruben E.; Valentin, Klaus U.; Worden, Alexandra Z.; Armbrust, E. Virginia; Clark, Matthew D.; Bowler, Chris; Green, Beverley R.; Moulton, Vincent; van Oosterhout, Cock; Grigoriev, Igor V.
Genomic Methods Take The Plunge: Recent Advances In High-throughput Sequencing Of Marine Mammals (2016) [10.1093/jhered/esw044]
Cammen, K. M.; Andrews, K. R.; Carroll, E. L.; Foote, A. D.; Humble, E.; Khudyakov, J. I.; Louis, M.; McGowen, M. R.; Olsen, M. T.; Van Cise, A. M.
A Novel Uncultured Heterotrophic Bacterial Associate Of The Cyanobacterium Moorea Producens JHB (2016) [10.1186/s12866-016-0817-1]
Cummings, S. L.; Barbe, D.; Leao, T. F.; Korobeynikov, A.; Engene, N.; Glukhov, E.; Gerwick, W. H.; Gerwick, L.
Conserved Noncoding Elements In The Most Distant Genera Of Cephalochordates: The Goldilocks Principle (2016) [10.1093/gbe/evw158]
Yue, J. X.; Kozmikova, I.; Ono, H.; Nossa, C. W.; Kozmik, Z.; Putnam, N. H.; Yu, J. K.; Holland, L. Z.