Biological Oceanography (BO)

Biological Oceanography is concerned with the interactions of populations of marine organisms with one another and with their physical and chemical environment. Because these interactions are frequently complex, and because the concepts and techniques draw from many fields, biological oceanography is, of necessity, an interdisciplinary science. Training in physical oceanography, marine chemistry, marine geology, and several biological areas are therefore pertinent.

Biological oceanography research is conducted on space/time scales ranging from short-term interactions between individual organisms (mm., sec.) to interdecadal variation in widely dispersed populations. The techniques used are diverse, and even within one space/time domain can include field observation, experimentation in the laboratory, and mathematical modeling.

Research topics include:

  • Primary and secondary productivity and nutrient regeneration
  • Community ecology of benthic and pelagic organisms
  • Food web structure and trophic ecology
  • Population dynamics, habitat changes and disruptions
  • Nonequilibrium ecosystems
  • Microbial ecology and biogeochemical cycling
  • Fishery biology and management
  • Marine mammal ecology and communication
  • Systematics and biogeography
  • Population genetics and evolution
  • Behavior as it affects distributions and food web interactions
  • Climate change impacts including warming, ocean acidification and deoxygenation

California current ecosystems, deep sea biology, kelp forest and coral reef ecology, and polar biology are among the realms addressed. Development and testing of new tools (molecular, optical, acoustic), design of sampling programs, and statistical/mathematical analyses of data and modeling also are significant activities.

Requirements for Admission

In addition to the general requirements for admission to the PhD program listed here, two years of chemistry, including general and organic chemistry, and a year of general biology are required. Physical chemistry with calculus may be substituted for physics with calculus where a more elementary physics course was taken. Zoology or botany may be substituted for general biology.

Preparation should also include a course in general geology and at least one course in each of the following categories: systematics (e.g., invertebrate zoology), population biology (e.g., ecology), functional biology (e.g., physiology).

In special cases, other advanced courses in mathematics or natural sciences may be substituted. Applicants are encouraged, but not required, to submit scores from the biology subject test of the GRE.

Program of Study for PhD

Required course work:

  • SIOC 210 Physical Oceanography (4 units)
  • SIOG 260 Marine Chemistry (4 units)
  • SIOB 280 Biological Oceanography (4 units)
  • Graduate-level course in statistics/quantitative analysis
  • One of the following:
    • SIOB 270 Pelagic Ecology (4 units)
    • SIOB 270A Fisheries Oceanography (4 units)
  • One of the following:
    • SIOB 275A Benthic Ecology (4 units)
    • SIOB 277 Deep-Sea Biology (4 units)
  • One of the following:
    • SIO 183 Phycology: Marine Plant Biology (5 units)
    • SIO 184 Marine Invertebrates (6 units)
    • SIOB 271 Marine Zooplankton (5 units)
    • SIOB 282 Phytoplankton Diversity (4 units)
    • SIOB 294 Biology of Fishes (5 units)
    • SIOB 296 Marine Tetrapods (4 units)

    Participatory (required)

  • SIOB 273 Professional Ethics in Science
  • SIOB 278 Seminar in Biosciences (annual after Y1)
  • SIO 299 Research

Program of Study for MS

Required course work:

  • SIOC 210. Physical Oceanography (4 units)
  • SIOG 260. Marine Chemistry (4 units)
  • SIOG 280. Biological Oceanography (4 units)
  • One of the following:
    • SIOG 240. Marine Geology (4 units)
    • SIOG 255. Paleobiology and History of Life (6 units)
  • One of the following:
    • SIOB 270. Pelagic Ecology (4 units)
    • SIOB 270A. Fisheries Oceanography (4 units)
    • SIOB 275A. Benthic Ecology (4 units)
    • SIOB 277. Deep-Sea Biology (4 units)
  • One of the following:
    • SIOB 271. Marine Zooplankton (5 units)
    • SIOB 282. Phytoplankton Diversity (4 units)
    • SIOB 283. Phycology: Marine Plant Biology (5 units)
    • SIOB 284. Marine Invertebrates (6 units)
    • SIOB 294. Biology of Fishes (5 units)
    • SIOB 296. Marine Tetrapods (4 units)

Elective course work:

Other course work required for the Plan II masters will be recommended by the student’s guidance committee, usually including one quarter of SIO 278, Seminar in Ocean Biosciences (or equivalent participatory seminar); a course in introductory parametric statistics; and at least one advanced-level course in physical, chemical, or geological oceanography.

Research in Biological Oceanography

Of the sixteen categories of research at Scripps, the BO group is most closely associated with the following integrated research themes:

Biological Oceanography Faculty and Researchers: